Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs8004361 chr14:24410543 G/A 4.06E-5 508 23.58 21.15 16.63 KM Plot
LGG rs8004860 chr14:24410800 G/C 4.06E-5 508 23.58 21.15 16.63 KM Plot
LGG rs80062634 chr6:53167352 G/C 2.5E-5 509 22.6 21.6 14.8 KM Plot
LGG rs8007763 chr14:24423329 G/C 4.03E-5 509 23.58 21.15 15.53 KM Plot
LGG rs8009022 chr14:24423370 C/T 4.09E-5 508 23.58 21.3 15.53 KM Plot
LGG rs8009382 chr14:24411035 G/A 4.06E-5 508 23.58 21.15 16.63 KM Plot
LGG rs8009599 chr14:24423666 C/T 4.03E-5 509 23.58 21.15 15.53 KM Plot
LGG rs8010151 chr14:24423582 C/T 4.14E-5 509 15.53 21.3 23.53 KM Plot
LGG rs8011236 chr14:24411066 A/G 1.45E-5 509 23.52 21.45 17.73 KM Plot
LGG rs80141683 chr6:53112374 A/G 1.85E-5 509 22.47 23.5 14.8 KM Plot
LGG rs80176274 chr6:53111712 G/C 1.85E-5 509 22.47 23.5 14.8 KM Plot
LGG rs8017937 chr14:73719303 G/A 3.34E-10 504 21.77 26.5 3.73 KM Plot
LGG rs8018338 chr14:102169056 T/C 6.22E-13 505 21.7 28.72 5.4 KM Plot
LGG rs80245801 chr16:10839921 G/A 2.19E-5 507 22.47 22.78 8.17 KM Plot
LGG rs8033862 chr15:67139135 G/T 9.78E-5 502 21.43 25.13 18.63 KM Plot